biomarker_tabulation
Biomarker tabulation step.
Merges the four per-file Granite metric dicts (GA / fluid / CST / GCC), derives
the drusen + per-label segmentation-area columns, applies the biomarker
group/name column filter, and returns a csv_report_df (with TECHNICAL column
names) for the downstream csv_report step.
GRANITE_CSV_RENAME_COLS is re-exported here so the csv_report step (Task 8)
and the E2E test (Task 10) can reference the technical→display column map
without importing the v8 protocol.
Module
Submodules
- bitfount.steps.biomarker_tabulation.functions - Pure biomarker tabulation logic + Granite biomarker constants.
- bitfount.steps.biomarker_tabulation.v1 - biomarker_tabulation step v1.
- bitfount.steps.biomarker_tabulation.v2 - biomarker_tabulation step v2.