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ga_trial_pdf_jade

Generate a PDF report from a template using ReportLab.

Module​

Functions​

generate_pdf​

def generate_pdf(    file_name: Union[str, os.PathLike[str]],    report_info: AltrisRecordInfo,    scans: Union[AltrisScan, list[AltrisScan]],    metrics: Union[GAMetrics, list[GAMetrics]],    task_id: str,    total_ga_area_lower_bound: float = 2.5,    total_ga_area_upper_bound: float = 17.5,) ‑> None:

Generates a PDF report.

Arguments

  • file_name: The name of the file to save the report to.
  • report_info: The report info.
  • scans: The scans.
  • metrics: The GA metrics.
  • total_ga_area_lower_bound: The lower bound for the GA area. This is used to generate the slider. Defaults to 2.5.
  • total_ga_area_upper_bound: The upper bound for the GA area. This is used to generate the slider. Defaults to 17.5.
  • task_id: The task ID.

Classes​

AltrisRecordInfo​

class AltrisRecordInfo(    text_fields: list[tuple[str, str]], heading: Optional[str] = 'GA OCT REPORT',):

Patient/scan information for the report.

Arguments

  • text_fields: A list of tuples of heading and value for the pdf top table.
  • heading: The heading for the pdf. Defaults to None.

Variables​

  • static heading : Optional[str]
  • static text_fields : list[tuple[str, str]]

AltrisScan​

class AltrisScan(    bscan_image: Union[str, os.PathLike[str], Image],    bscan_idx: int,    bscan_total: int,    bscan_w_mask: Union[str, os.PathLike[str], Image],    legend2color: dict[str, tuple[int, int, int]],    laterality: Optional[str] = None,    bscan_en_face: Optional[Union[str, os.PathLike[str], Image]] = None,):

Scan information for the report.

Arguments

  • name: Name of the scan.
  • en_face_image_path: Path to the en-face image.
  • bscan_image_path: Path to the B-scan image. This should be the bscan that corresponds to the location of the fovea.

Variables​

  • static bscan_en_face : Union[str, os.PathLike[str], PIL.Image.Image, ForwardRef(None)]
  • static bscan_idx : int
  • static bscan_image : Union[str, os.PathLike[str], PIL.Image.Image]
  • static bscan_total : int
  • static bscan_w_mask : Union[str, os.PathLike[str], PIL.Image.Image]
  • static laterality : Optional[str]
  • static legend2color : dict[str, tuple[int, int, int]]

ReportJade​

class ReportJade(    record_info: AltrisRecordInfo,    scan: Union[AltrisScan, list[AltrisScan]],    metrics: Union[GAMetrics, list[GAMetrics]],    task_id: str,    total_ga_area_lower_bound: float = 2.5,    total_ga_area_upper_bound: float = 17.5,    **kwargs: Any,):

Generate a PDF report from a template using ReportLab.

Arguments

  • report_info: Patient/scan information for the report.
  • scan: List of scans to include in the report.
  • metrics: List of GA metrics to include in the report.
  • total_ga_area_lower_bound: The lower bound for the GA area. This is used to generate the slider. Defaults to 2.5.
  • total_ga_area_upper_bound: The upper bound for the GA area. This is used to generate the slider. Defaults to 17.5.
  • task_id: The task ID.

Methods​

generate​

def generate(self) ‑> None:

Generates the report.

This should be called by the user.

output​

def output(self, filename: Union[str, os.PathLike[str]]) ‑> None:

Save the PDF to a file.

Arguments

  • filename: The path to save the PDF.