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v1

patient_enrichment record, v1 — canonical aliases.

Consumers and the record registry import from here and never touch the inner module names, mirroring steps/*/v1/__init__.py.

Module​

Submodules​

Classes​

ORM​

class ORM(**kwargs):

One supplied measurement, as a single observation-shaped fact.

Long format on purpose: a new key in the supplied payload becomes new rows, never a schema migration. measured_at is part of the key, so a patient's measurement history accumulates rather than overwriting — which keeps a recency criterion possible later without a migration either.

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance's class are allowed. These could be, for example, any mapped columns or relationships.

Ancestors​

Variables​

  • bitfount_patient_id : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • code_code : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • code_system : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • laterality : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • measured_at : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • mrn : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • processed_at : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • run_id : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • source : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • source_hash : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • tags : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • task_hash : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • unit : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • value_num : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]
  • value_str : Union[sqlalchemy.orm.attributes.InstrumentedAttribute[+_T_co], +_T_co]

Record​

class Record(**data: Any):

One externally-supplied measurement.

Re-runs upsert on (task_hash, bitfount_patient_id, source, code_code, laterality, measured_at).

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

Variables​

  • static bitfount_patient_id : str
  • static code_code : str
  • static code_system : str
  • static laterality : str
  • static measured_at : str
  • static model_config
  • static mrn : str | None
  • static run_id : str | None
  • static source : str
  • static source_hash : str
  • static task_hash : str
  • static unit : str | None
  • static value_num : float | None
  • static value_str : str | None